- Anthropology (PhD)
- Art History and Archaeology (PhD)
- Biology and Biomedical Sciences:
- Biochemistry, Biophysics & Structural Biology (PhD)
- Cancer Biology (PhD)
- Computational and Systems Biology (PhD)
- Developmental, Regenerative and Stem Cell Biology (PhD)
- Evolution, Ecology and Populations Biology (PhD)
- Human and Statistical Genetics (PhD)
- Immunology (PhD)
- Molecular Cell Biology (PhD)
- Molecular Genetics and Genomics (PhD)
- Molecular Microbiology and Microbial Pathogenesis (PhD)
- Neurosciences (PhD)
- Plant and Microbial Biosciences (PhD)
- Chemistry (PhD)
- Chinese and Comparative Literature (PhD)
- Chinese Language and Literature (PhD)
- Classics
- Comparative Literature (PhD)
- Earth and Planetary Sciences (PhD)
- Economics (PhD)
- Education (PhD)
- English and American Literature (PhD)
- English and Comparative Literature (PhD)
- French and Comparative Literature (PhD)
- French Language and Literature (PhD)
- German and Comparative Literature (PhD)
- Germanic Languages and Literatures (PhD)
- Hispanic Studies (PhD)
- History (PhD)
- Institute of Material Science and Engineering (PhD)
- Interdisciplinary Studies (PhD)
- Japanese and Comparative Literature (PhD)
- Mathematics (PhD)
- Music (PhD)
- Movement Science (PhD)
- Philosophy (PhD)
- Philosophy-Neuroscience-Psychology (PhD)
- Physics (PhD)
- Political Science (PhD)
- Psychology (PhD)
- Spanish and Comparative Literature (PhD)
- Speech and Hearing Sciences (PhD)
- Writing (MFAW)
Joint degree programs:
- East Asian Studies and Business Administration (AM/MBA)
- East Asian Studies and Law (AM/JD)